PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.22227s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

G2-like

Protein Properties

Length: 211aa MW: 24154.9 Da PI: 5.6229

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.22227s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.5	1.7e-29	15	66	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 prlrW+++LH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQk+ Araha.22227s0001.1.p 15 PRLRWNSDLHNSFVQAVEQLGGENRATPKMVLQLMDVRGLTISHVKSHLQKH 66 8*************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-27	11	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.839	11	71	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-14	13	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-22	15	66	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-6	16	66	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MKNSIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK 60 SHLQKHIQSL AEEILAKRSV RVTGQVTWWQ FQQYLHNYQR LRGNANFFQN HQRQEEEMYE 120 KIITFGESSN ETKEGPSDYF TCKSLYESSR APQNKTRDDD ENGDVVVAID DDGNVVGEHD 180 DDDVTLSLNS IKVSKEEEEL SLELTLGLKA *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF074021	4e-60	AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBank	AL161501	4e-60	AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBank	CP002687	4e-60	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010455747.1	1e-121	PREDICTED: uncharacterized protein LOC104737306 isoform X1
TrEMBL	A0A078E9A2	1e-109	A0A078E9A2_BRANA; BnaA02g21100D protein
STRING	scaffold_603773.1	5e-55	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	2e-32	G2-like family protein

Link Out ? help Back to Top
Phytozome	Araha.22227s0001.1.p